Basic Information
Locus ID:
Sbi_jg7513
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000030l | 46482435 | 46503706 | - | Sbi_jg7513 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 26,558.63 Da | 45.88 | 77.66 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 72 | 8.44358E-39 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 6.0E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 85 | 172 | 1.9E-22 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 74 | 2.62E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 101 | 3.5E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 9.9E-39 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 178 | 13.321521 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.963987 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.0E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.0E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.0E-28 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 203 | - | - |
| Coils | Coil | Coil | 151 | 171 | - | - |
| Coils | Coil | Coil | 122 | 145 | - | - |
| Coils | Coil | Coil | 88 | 108 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_021754068.1 | MADS-box protein SOC1-like isoform X1 [Chenopodium quinoa] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RXL2 | MADS-box protein OS=Spinacia oleracea OX=3562 GN=SOVF_023090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology