halophFGD

Basic Information

Locus ID: Sbi_jg7296

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Short Name: ELIP

Description: early light-induced protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000030l	40654878	40655895	-	Sbi_jg7296

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.13	18,771.84 Da	27.06	102.05	0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00504	Chlorophyll A-B binding protein	77	136	9.1E-6	IPR022796
SUPERFAMILY	SSF103511	Chlorophyll a-b binding protein	77	172	1.11E-16	-
Gene3D	G3DSA:1.10.3460.10	Chlorophyll a/b binding protein domain	78	176	5.0E-7	IPR023329

Best hit

Source	Best Hit ID	Description
TAIR	AT4G14690.1	Chlorophyll A-B binding family protein. Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.
RefSeq	XP_010676774.1	early light-induced protein 2, chloroplastic-like [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q94K66	Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP2 PE=1 SV=1
TrEMBL	A0A0K9QDX3	Early light-induced protein 1, chloroplastic-like OS=Spinacia oleracea OX=3562 GN=SOVF_190050 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg12605
Aizoaceae	Mesembryanthemum crystallinum	5	gene_15206, gene_15209, gene_15210, gene_15211, gene_2266
Amaranthaceae	Atriplex hortensis	8	Ah003333, Ah003334, Ah003335, Ah003337, Ah003338, Ah003339 ... Ah034357, Ah034358
Amaranthaceae	Beta vulgaris	3	BVRB_5g102940, BVRB_5g102950, BVRB_5g102960
Amaranthaceae	Salicornia bigelovii	14	Sbi_jg4763, Sbi_jg4769, Sbi_jg4772, Sbi_jg4775, Sbi_jg4776 ... Sbi_jg4778, Sbi_jg4779, Sbi_jg4780, Sbi_jg7291, Sbi_jg7292, Sbi_jg7294, Sbi_jg7296, Sbi_jg7297, Sbi_jg7306
Amaranthaceae	Salicornia europaea	6	Seu_jg12701, Seu_jg12703, Seu_jg12704, Seu_jg12705 ... Seu_jg12706, Seu_jg12707
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00001432, GOSA_00001433, GOSA_00001434, GOSA_00001435 ... GOSA_00014472
Amaranthaceae	Suaeda glauca	4	Sgl51686, Sgl51687, Sgl56990, Sgl56991
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000005193, gene:ENSEOMG00000021748 ... gene:ENSEOMG00000023326, gene:ENSEOMG00000026303, gene:ENSEOMG00000026780
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0010150, CQ.Regalona.r1.5AG0010170 ... CQ.Regalona.r1.5BG0010710, CQ.Regalona.r1.5BG0010720
Anacardiaceae	Pistacia vera	9	pistato.v30030500, pistato.v30030510, pistato.v30033150 ... pistato.v30033160, pistato.v30033180, pistato.v30033190, pistato.v30033210, pistato.v30033220, pistato.v30236120
Apiaceae	Apium graveolens	6	Ag10G00140, Ag1G01829, Ag1G01830, Ag6G02739, Ag9G01745 ... Ag9G01986
Arecaceae	Cocos nucifera	3	COCNU_06G015370, COCNU_14G011580, scaffold013062G000030
Arecaceae	Phoenix dactylifera	2	gene-LOC103697096, gene-LOC103704509
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.547.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G08381, Ftri14G08990, Ftri14G11171, Ftri14G21520
Brassicaceae	Arabidopsis thaliana	2	AT3G22840.1, AT4G14690.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10021557m.g.v1.0, Thhalv10026318m.g.v1.0 ... Thhalv10026335m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g20540.v2.2, Sp7g07580.v2.2
Brassicaceae	Brassica nigra	4	BniB01g039630.2N, BniB03g024830.2N, BniB05g021430.2N ... BniB07g049010.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G0346
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno06g13160, gene.Cymno06g13180, gene.Cymno15g05210
Dunaliellaceae	Dunaliella salina	9	Dusal.0172s00023.v1.0, Dusal.0200s00016.v1.0 ... Dusal.0244s00014.v1.0, Dusal.0361s00001.v1.0, Dusal.0419s00009.v1.0, Dusal.0419s00010.v1.0, Dusal.0419s00012.v1.0, Dusal.0515s00012.v1.0, Dusal.1125s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	7	gene.Thate02g36220, gene.Thate02g36230, gene.Thate02g36250 ... gene.Thate02g36260, gene.Thate08g10730, gene.Thate08g10740, gene.Thate08g10750
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG11.938, evm.TU.LG11.939, evm.TU.LG11.940 ... evm.TU.LG11.941, evm.TU.LG11.942, evm.TU.LG11.943
Plantaginaceae	Plantago ovata	1	Pov_00040557
Plumbaginaceae	Limonium bicolor	3	Lb1G07981, Lb1G07984, Lb2G11262
Poaceae	Echinochloa crus-galli	16	AH03.384, AH03.385, AH03.386, AH03.388, AH03.561, AH06.1674 ... BH03.463, BH03.464, BH03.465, BH03.466, CH03.140, CH03.542, CH03.543, CH03.544, CH03.545, CH06.1750
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_7AG0557900, gene-QOZ80_7AG0557910 ... gene-QOZ80_7AG0557930, gene-QOZ80_7AG0557970, gene-QOZ80_7AG0557980, gene-QOZ80_7AG0557990, gene-QOZ80_7AG0558010, gene-QOZ80_7AG0558040, gene-QOZ80_7BG0589030, gene-QOZ80_7BG0589050, gene-QOZ80_7BG0589060, gene-QOZ80_7BG0589070, gene-QOZ80_7BG0589090, gene-QOZ80_7BG0589120
Poaceae	Hordeum vulgare	20	HORVU.MOREX.r3.1HG0048900.1, HORVU.MOREX.r3.1HG0048930.1 ... HORVU.MOREX.r3.1HG0068450.1, HORVU.MOREX.r3.1HG0068460.1, HORVU.MOREX.r3.1HG0068480.1, HORVU.MOREX.r3.1HG0068490.1, HORVU.MOREX.r3.4HG0392110.1, HORVU.MOREX.r3.4HG0395490.1, HORVU.MOREX.r3.4HG0395500.1, HORVU.MOREX.r3.5HG0481860.1.CDS1, HORVU.MOREX.r3.5HG0481870.1.CDS1, HORVU.MOREX.r3.5HG0481890.1.CDS1, HORVU.MOREX.r3.5HG0481900.1.CDS1, HORVU.MOREX.r3.5HG0481920.1.CDS1, HORVU.MOREX.r3.5HG0481950.1, HORVU.MOREX.r3.5HG0482040.1.CDS1, HORVU.MOREX.r3.5HG0482050.1, HORVU.MOREX.r3.5HG0482060.1.CDS1, HORVU.MOREX.r3.5HG0482070.1.CDS1, HORVU.MOREX.r3.5HG0482080.1.CDS1
Poaceae	Lolium multiflorum	19	gene-QYE76_008308, gene-QYE76_008311, gene-QYE76_008315 ... gene-QYE76_008316, gene-QYE76_008317, gene-QYE76_008319, gene-QYE76_021793, gene-QYE76_042810, gene-QYE76_042811, gene-QYE76_042812, gene-QYE76_042813, gene-QYE76_042814, gene-QYE76_042815, gene-QYE76_042816, gene-QYE76_042817, gene-QYE76_042818, gene-QYE76_042819, gene-QYE76_042820, gene-QYE76_042823
Poaceae	Oryza coarctata	2	Oco13G002530, Oco14G002760
Poaceae	Oryza sativa	6	LOC_Os01g14410.1, LOC_Os02g16560.1, LOC_Os03g30400.1 ... LOC_Os06g39500.1, LOC_Os07g08150.1, LOC_Os07g08160.1
Poaceae	Paspalum vaginatum	20	gene-BS78_02G051600, gene-BS78_02G051800, gene-BS78_K027500 ... gene-BS78_02G051900, gene-BS78_02G052000, gene-BS78_02G052400, gene-BS78_02G052900, gene-BS78_02G053000, gene-BS78_02G053100, gene-BS78_02G053200, gene-BS78_02G053300, gene-BS78_02G053500, gene-BS78_02G053600, gene-BS78_02G053700, gene-BS78_02G053900, gene-BS78_K219500, gene-BS78_K219600, gene-BS78_K219700, gene-BS78_K219900, gene-BS78_K220000
Poaceae	Puccinellia tenuiflora	18	Pt_Chr0101031, Pt_Chr0101144, Pt_Chr0104473, Pt_Chr0104474 ... Pt_Chr0104475, Pt_Chr0105938, Pt_Chr0206329, Pt_Chr0206330, Pt_Chr0206331, Pt_Chr0206332, Pt_Chr0206334, Pt_Chr0301205, Pt_Chr0303678, Pt_Chr0303680, Pt_Chr0303681, Pt_Chr0700501, Pt_Chr0700503, Pt_Chr0703842
Poaceae	Sporobolus alterniflorus	13	Chr01G011340, Chr12G025390, Chr23G013360, Chr24G000410 ... Chr24G000420, Chr24G000430, Chr24G000440, Chr24G000450, Chr24G000460, Chr24G000470, Chr28G001820, Chr28G001850, Chr28G001870
Poaceae	Thinopyrum elongatum	11	Tel1E01G509500, Tel1E01G509600, Tel4E01G412300 ... Tel5E01G359300, Tel5E01G359600, Tel5E01G359700, Tel5E01G359900, Tel5E01G360200, Tel5E01G360300, Tel5E01G360600, Tel7E01G387500
Poaceae	Triticum dicoccoides	18	gene_TRIDC1AG046960, gene_TRIDC1AG046970 ... gene_TRIDC1AG046980, gene_TRIDC1AG046990, gene_TRIDC1BG053150, gene_TRIDC4AG008830, gene_TRIDC4AG010890, gene_TRIDC4BG039710, gene_TRIDC4BG042250, gene_TRIDC5AG035220, gene_TRIDC5AG035250, gene_TRIDC5AG035260, gene_TRIDC5AG035270, gene_TRIDC5BG037000, gene_TRIDC5BG037010, gene_TRIDC5BG037040, gene_TRIDC5BG037050, gene_TRIDC7AG026980
Poaceae	Triticum aestivum	36	TraesCS1A02G314500.1, TraesCS1A02G314600.1 ... TraesCS1A02G314800.1, TraesCS1A02G314900.1, TraesCS1B02G326800.1, TraesCS1B02G326900.1, TraesCS1D02G315000.1, TraesCS1D02G315100.1, TraesCS1D02G315200.1, TraesCS4A02G063600.1, TraesCS4A02G067500.1, TraesCS4B02G224800.1, TraesCS4B02G240700.1, TraesCS4D02G225400.1, TraesCS4D02G240400.1, TraesCS5A02G219000.1.cds1, TraesCS5A02G219300.1, TraesCS5A02G219400.1, TraesCS5A02G219500.1, TraesCS5A02G219600.1, TraesCS5A02G219700.1.cds1, TraesCS5B02G217900.1.cds1, TraesCS5B02G218200.1, TraesCS5B02G218400.1, TraesCS5B02G218500.1, TraesCS5B02G218600.1.cds1, TraesCS5D02G226900.1.cds1, TraesCS5D02G227000.1.cds1, TraesCS5D02G227300.1, TraesCS5D02G227400.1, TraesCS5D02G227500.1, TraesCS5D02G227600.1.cds1, TraesCS5D02G227700.1.cds1, TraesCS7A02G213700.1, TraesCS7B02G120900.1, TraesCS7D02G215700.1
Poaceae	Zea mays	3	Zm00001eb116960_P002, Zm00001eb301260_P001 ... Zm00001eb301270_P001
Poaceae	Zoysia japonica	9	nbis-gene-26827, nbis-gene-26828, nbis-gene-26830 ... nbis-gene-26832, nbis-gene-26833, nbis-gene-26834, nbis-gene-35665, nbis-gene-35666, nbis-gene-56689
Poaceae	Zoysia macrostachya	11	Zma_g4812, Zma_g4813, Zma_g6078, Zma_g6079, Zma_g6080 ... Zma_g6081, Zma_g6082, Zma_g6083, Zma_g6084, Zma_g6085, Zma_g6086
Portulacaceae	Portulaca oleracea	18	evm.TU.LG04.2846, evm.TU.LG13.1300, evm.TU.LG16.792 ... evm.TU.LG18.537, evm.TU.LG18.538, evm.TU.LG18.539, evm.TU.LG18.540, evm.TU.LG18.541, evm.TU.LG18.542, evm.TU.LG21.926, evm.TU.LG26.484, evm.TU.LG26.485, evm.TU.LG26.486, evm.TU.LG26.487, evm.TU.LG26.488, evm.TU.LG26.494, evm.TU.LG26.495, evm.TU.LG26.496
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g02240, gene.Posoc07g10230
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_6_RagTag.791
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-15904
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-16760
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-665
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000011l.484
Rhizophoraceae	Kandelia obovata	1	Maker00006885
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-15282
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-3514
Salicaceae	Populus euphratica	3	populus_peu07432, populus_peu07433, populus_peu07434
Solanaceae	Lycium barbarum	10	gene-LOC132609795, gene-LOC132609815, gene-LOC132609816 ... gene-LOC132609817, gene-LOC132609990, gene-LOC132610041, gene-LOC132610124, gene-LOC132610766, gene-LOC132611658, gene-LOC132617767
Solanaceae	Solanum chilense	2	SOLCI000276600, SOLCI000276700
Solanaceae	Solanum pennellii	2	gene-LOC107031239, gene-LOC107031240
Tamaricaceae	Reaumuria soongarica	7	STRG.7857_chr04_-, gene_4289, gene_4290, gene_4291 ... gene_4292, gene_4578, gene_4579
Tamaricaceae	Tamarix chinensis	5	TC05G0162, TC05G0164, TC05G0169, TC05G0173, TC05G0175
Zosteraceae	Zostera marina	2	Zosma01g18760.v3.1, Zosma05g32660.v3.1