halophFGD

Basic Information

Locus ID: Sbi_jg6976

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000030l	16280148	16281459	+	Sbi_jg6976

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.08	22,537.97 Da	34.92	109.01	0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00141	Peroxidase	50	162	6.7E-19	IPR002016
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	147	197	3.42E-9	IPR011009
SUPERFAMILY	SSF48113	Heme-dependent peroxidases	34	149	4.72E-31	IPR010255
Gene3D	G3DSA:1.10.520.10	-	34	188	1.5E-39	-
ProSiteProfiles	PS50873	Plant heme peroxidase family profile.	33	161	28.029554	IPR002016
ProSitePatterns	PS00436	Peroxidases active site signature.	65	76	-	IPR019794
PRINTS	PR00458	Haem peroxidase superfamily signature	65	79	2.0E-6	IPR002016
PRINTS	PR00461	Plant peroxidase signature	129	139	1.4E-19	IPR000823
PRINTS	PR00461	Plant peroxidase signature	43	62	1.4E-19	IPR000823
PRINTS	PR00461	Plant peroxidase signature	108	121	1.4E-19	IPR000823
PRINTS	PR00461	Plant peroxidase signature	67	87	1.4E-19	IPR000823
PRINTS	PR00458	Haem peroxidase superfamily signature	130	147	2.0E-6	IPR002016

Gene Ontology

Biological Process:

GO:0006979 (response to oxidative stress)

Molecular Function:

GO:0004601 (peroxidase activity) GO:0020037 (heme binding)

KEGG Pathway

KO Term:

K00430 (peroxidase [EC:1.11.1.7])

Pathway:

ko00940 (Phenylpropanoid biosynthesis) map00940 (Phenylpropanoid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R00602 (Methanol + Hydrogen peroxide <=> Formaldehyde + 2 H2O) R02596 (Coniferyl alcohol <=> Guaiacyl lignin) R03919 (Sinapyl alcohol <=> Syringyl lignin) R04007 (4-Coumaryl alcohol <=> p-Hydroxyphenyl lignin) R07443 (5-Hydroxyconiferyl alcohol <=> 5-Hydroxy-guaiacyl lignin)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G67400.1	root hair specific 19.
RefSeq	XP_021714435.1	peroxidase 50-like [Chenopodium quinoa]
Swiss-Prot	Q43873	Peroxidase 73 OS=Arabidopsis thaliana OX=3702 GN=PER73 PE=1 SV=1
TrEMBL	A0A803KY75	Peroxidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg15606, Sbi_jg19613, Sbi_jg27518, Sbi_jg53453 ... Sbi_jg60288, Sbi_jg6976
Apiaceae	Apium graveolens	1	Ag7G01434
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1484.V1.1, AsparagusV1_04.2628.V1.1 ... AsparagusV1_09.1390.V1.1
Poaceae	Zea mays	1	Zm00001eb058250_P001
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_6_RagTag.22