Basic Information
Locus ID:
Sbi_jg6699
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000030l | 409775 | 413437 | + | Sbi_jg6699 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 69,450.70 Da | 36.15 | 79.94 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 301 | 568 | 2.57484E-88 | - |
| Pfam | PF07645 | Calcium-binding EGF domain | 126 | 166 | 1.7E-4 | IPR001881 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 300 | 565 | 5.0E-45 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 279 | 566 | 8.47E-75 | IPR011009 |
| SUPERFAMILY | SSF57184 | Growth factor receptor domain | 73 | 205 | 2.51E-5 | IPR009030 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 124 | 213 | 1.0E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 371 | 578 | 1.6E-55 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 16 | 121 | 2.0E-5 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 261 | 370 | 3.3E-29 | - |
| SMART | SM00181 | egf_5 | 127 | 167 | 110.0 | IPR000742 |
| SMART | SM00220 | serkin_6 | 295 | 568 | 5.2E-28 | IPR000719 |
| SMART | SM00181 | egf_5 | 18 | 64 | 0.31 | IPR000742 |
| SMART | SM00181 | egf_5 | 80 | 121 | 30.0 | IPR000742 |
| SMART | SM00181 | egf_5 | 173 | 214 | 67.0 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 295 | 568 | 36.569618 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 77 | 116 | 10.560543 | IPR000742 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 416 | 428 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 301 | 323 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_048496212.1 | wall-associated receptor kinase 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0J8B628 | Protein kinase domain-containing protein (Fragment) OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_010520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg6695, Sbi_jg6699 |