halophFGD

Basic Information

Locus ID: Sbi_jg6552

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: U-box domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000002l	83453343	83457782	-	Sbi_jg6552

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.62	27,959.75 Da	50.65	79.88	-0.65

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	143	159	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	143	163	-	-
Coils	Coil	Coil	195	226	-	-
Coils	Coil	Coil	158	185	-	-

KEGG Pathway

KO Term:

K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G25160.1	U-box domain-containing protein kinase family protein.
RefSeq	XP_048496871.1	U-box domain-containing protein 35 isoform X4 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q9SW11	U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2
TrEMBL	A0A803MKS8	Serine/threonine-protein kinase OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Beta vulgaris	1	BVRB_3g053410
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg6552
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000002416
Brassicaceae	Brassica nigra	1	BniB02g028570.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1395
Plantaginaceae	Plantago ovata	2	Pov_00029733, Pov_00040771
Poaceae	Lolium multiflorum	1	gene-QYE76_036504
Poaceae	Thinopyrum elongatum	1	Tel7E01G177700
Poaceae	Zoysia japonica	1	nbis-gene-38007