Basic Information
Locus ID:
Sbi_jg63579
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000034l | 19022918 | 19024330 | - | Sbi_jg63579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 52,675.38 Da | 35.48 | 96.49 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 288 | 335 | 4.0E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 364 | 387 | 0.035 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 161 | 183 | 0.25 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 86 | 132 | 1.3E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 188 | 233 | 4.0E-8 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 137 | 242 | 7.0E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 308 | 468 | 1.3E-28 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 11 | 136 | 2.8E-26 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 291 | 324 | 2.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 190 | 221 | 6.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 262 | 289 | 3.9E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 88 | 122 | 1.6E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 289 | 323 | 12.441133 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 188 | 222 | 10.314641 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 86 | 120 | 10.873667 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 258 | 288 | 8.648523 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02330.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_021749206.1 | pentatricopeptide repeat-containing protein At4g37170-like [Chenopodium quinoa] | 0 |
| Q9FWA6 | Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E90 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QI59 | Pentatricopeptide repeat-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_182680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59044, Sbi_jg63579 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23302 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02459, Sgl07612 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0024540, CQ.Regalona.r1.6AG0008160 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G26839 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14260 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2635 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.999, evm.TU.LG25.339 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g26870, gene.Posoc03g26890 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-812 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7526 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2415 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.240 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001976, Maker00002066 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19228 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1854 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16337_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0297 |