Basic Information
Locus ID:
Sbi_jg63483
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000034l | 17817372 | 17824647 | + | Sbi_jg63483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 58,856.55 Da | 48.92 | 84.22 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 217 | 511 | 4.32039E-50 | - |
| Pfam | PF08662 | Eukaryotic translation initiation factor eIF2A | 260 | 348 | 4.7E-5 | IPR013979 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 511 | 6.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 252 | 8.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 212 | 511 | 3.46E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 476 | 524 | 7.4E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 203 | 475 | 1.5E-53 | IPR015943 |
| SMART | SM00320 | WD40_4 | 427 | 469 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 383 | 0.59 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 423 | 8.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 252 | 5.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 2.4E-6 | IPR001680 |
| SMART | SM00668 | ctlh | 51 | 108 | 1.6E-7 | IPR006595 |
| SMART | SM00320 | WD40_4 | 300 | 341 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 512 | 7.1E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 253 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 18 | 50 | 8.77117 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 479 | 521 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 479 | 511 | 11.312864 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 301 | 10.759232 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 220 | 253 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 51 | 108 | 10.973299 | IPR006595 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_010684801.2 | WD repeat-containing protein WDS homolog [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LAD9 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology