Basic Information
Locus ID:
Sbi_jg6317
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 79462085 | 79473999 | + | Sbi_jg6317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.03 | 122,148.44 Da | 66.45 | 55.08 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 665 | 794 | 1.80993E-60 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 470 | 640 | 1.9E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 677 | 785 | 6.8E-31 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 518 | 800 | 3.35E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 655 | 826 | 4.6E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 420 | 654 | 1.3E-89 | IPR027417 |
| SMART | SM00490 | helicmild6 | 701 | 785 | 4.5E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 465 | 668 | 5.7E-66 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 446 | 474 | 11.192639 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 680 | 824 | 25.098572 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 477 | 651 | 31.043732 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 597 | 605 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 1091 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 901 | 916 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1003 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 942 | 979 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1039 | 1061 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1004 | 1038 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_010672591.1 | DEAD-box ATP-dependent RNA helicase 14 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW2 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology