Basic Information
Locus ID:
Sbi_jg62797
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000034l | 3595569 | 3601664 | + | Sbi_jg62797 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 31,133.31 Da | 56.14 | 56.85 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 153 | 195 | 3.2E-5 | IPR018957 |
| Pfam | PF05495 | CHY zinc finger | 18 | 98 | 1.5E-20 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 200 | 258 | 2.7E-27 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 202 | 3.18E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 89 | 146 | 3.27E-20 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 15 | 87 | 2.35E-18 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 225 | 2.6E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 226 | 265 | 9.1E-20 | - |
| SMART | SM00184 | ring_2 | 153 | 195 | 9.7E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 88 | 152 | 34.268806 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 11 | 86 | 24.907751 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 196 | 11.471321 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_010666396.2 | E3 ubiquitin-protein ligase MIEL1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B591 | E3 ubiquitin-protein ligase MIEL1-like OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_001810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology