Basic Information
Locus ID:
Sbi_jg62772
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000034l | 2332727 | 2342282 | + | Sbi_jg62772 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 88,684.70 Da | 48.30 | 67.30 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 370 | 668 | 8.5E-40 | IPR001394 |
| Pfam | PF01753 | MYND finger | 86 | 123 | 1.7E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 82 | 125 | 2.79E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 366 | 675 | 7.65E-82 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 362 | 677 | 6.1E-86 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 72 | 127 | 2.8E-11 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 370 | 671 | 47.627911 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 86 | 123 | 11.637236 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 86 | 123 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 371 | 386 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 270 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010681055.2 | ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RNB7 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Spinacia oleracea OX=3562 GN=SOVF_052480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology