Basic Information
Locus ID:
Sbi_jg62665
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 112245814 | 112252199 | + | Sbi_jg62665 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 96,589.92 Da | 43.21 | 77.99 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 400 | 455 | 1.87361E-28 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 404 | 456 | 6.7E-9 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 464 | 820 | 2.8E-33 | IPR001525 |
| Pfam | PF01426 | BAH domain | 137 | 255 | 2.1E-7 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 287 | 823 | 3.32E-76 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 394 | 456 | 3.44E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 272 | 384 | 6.3E-14 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 75 | 241 | 2.3E-47 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 618 | 789 | 2.5E-219 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 398 | 840 | 2.5E-219 | - |
| SMART | SM00439 | BAH_4 | 137 | 256 | 3.5E-16 | IPR001025 |
| SMART | SM00298 | chromo_7 | 399 | 458 | 1.4E-9 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 468 | 819 | 2.4E-29 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 137 | 256 | 16.614758 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 400 | 456 | 12.086901 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 288 | 830 | 45.069553 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 423 | 443 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 289 | 305 | 6.5E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 559 | 572 | 6.5E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 513 | 527 | 6.5E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010673524.2 | DNA (cytosine-5)-methyltransferase CMT3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R7E9 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_103070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology