Basic Information
Locus ID:
Sbi_jg62538
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 110532569 | 110538114 | + | Sbi_jg62538 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 34,811.11 Da | 42.56 | 82.83 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 172 | 270 | 2.9E-19 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 134 | 274 | 1.48E-36 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 129 | 174 | 5.1E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 175 | 294 | 4.2E-28 | - |
| SMART | SM00220 | serkin_6 | 157 | 305 | 8.8E-5 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 62 | 307 | 17.064697 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 231 | 243 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60900.1 | receptor-like protein kinase 1. Encodes a receptor-like protein kinase. | 0 |
| RefSeq | XP_021771995.1 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 [Chenopodium quinoa] | 0 |
| Q39202 | G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana OX=3702 GN=RLK1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803KM06 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10513 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004907 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg17902, Sbi_jg62537, Sbi_jg62538 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1109, Seu_jg1110 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007133, GOSA_00007134 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl82955 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4BG0000830 |