Basic Information
Locus ID:
Sbi_jg62256
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 106984281 | 106992057 | - | Sbi_jg62256 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 57,686.92 Da | 45.25 | 84.75 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 156 | 479 | 4.1E-88 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 120 | 509 | 1.57E-124 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 108 | 508 | 1.2E-120 | IPR012334 |
| SMART | SM00710 | pbh1 | 337 | 357 | 7300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 314 | 335 | 28.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 287 | 313 | 540.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 367 | 388 | 0.4 | IPR006626 |
| SMART | SM00710 | pbh1 | 396 | 417 | 5200.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 344 | 357 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56710.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010674532.2 | polygalacturonase At1g48100 [Beta vulgaris subsp. vulgaris] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RUV7 | Polygalacturonase At1g80170 OS=Spinacia oleracea OX=3562 GN=SOVF_025850 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology