Basic Information
Locus ID:
Sbi_jg62027
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
cyclin-dependent kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 103731952 | 103744628 | + | Sbi_jg62027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 20,854.94 Da | 43.16 | 87.92 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 27 | 182 | 1.9E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 25 | 182 | 4.45E-52 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 115 | 183 | 1.6E-21 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 17 | 114 | 1.4E-34 | - |
| SMART | SM00220 | serkin_6 | 27 | 183 | 2.9E-13 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 27 | 183 | 31.721655 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 33 | 56 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 154 | 166 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10270.1 | cyclin-dependent kinase C;1. Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. | 0 |
| RefSeq | XP_010673837.1 | cyclin-dependent kinase C-1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LFT8 | Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana OX=3702 GN=CDKC-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QVF5 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_137020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||