Basic Information
Locus ID:
Sbi_jg61848
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 101292239 | 101297252 | + | Sbi_jg61848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 58,040.30 Da | 48.59 | 80.79 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 397 | 518 | 6.74601E-60 | - |
| CDD | cd17920 | DEXHc_RecQ | 199 | 396 | 2.43086E-95 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 413 | 518 | 2.5E-14 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 207 | 373 | 5.7E-17 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 244 | 518 | 2.2E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 397 | 518 | 1.6E-39 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 164 | 396 | 4.7E-81 | IPR027417 |
| SMART | SM00490 | helicmild6 | 439 | 518 | 1.3E-16 | IPR001650 |
| SMART | SM00487 | ultradead3 | 201 | 405 | 2.9E-25 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 199 | 518 | 9.8E-128 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 213 | 389 | 19.663538 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 411 | 519 | 15.737299 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 132 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021860966.1 | ATP-dependent DNA helicase Q-like 1 [Spinacia oleracea] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QQ50 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_153870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology