Basic Information
Locus ID:
Sbi_jg61634
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 98083703 | 98088319 | - | Sbi_jg61634 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 39,380.72 Da | 40.77 | 86.58 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 59 | 308 | 7.0E-40 | IPR001373 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 32 | 300 | 3.66E-51 | IPR016159 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 171 | 326 | 2.3E-26 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 32 | 167 | 3.5E-21 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46210.1 | cullin4. Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1. | 0 |
| RefSeq | XP_010674703.1 | cullin-1 [Beta vulgaris subsp. vulgaris] | 0 |
| O60999 | Cullin-1 OS=Dictyostelium discoideum OX=44689 GN=culA PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QCE5 | Cullin domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_194910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11992 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005783 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g081090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17091, Sbi_jg61634 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg356 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008391 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24492, Sgl29674 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008591, gene:ENSEOMG00000026987 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0006040, CQ.Regalona.r1.4AG0008480 ... |
| Apiaceae | Apium graveolens | 2 | Ag1G00511, Ag1G00512 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G009480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716058 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G59790.1 |
| Brassicaceae | Brassica nigra | 2 | BniB08g045230.2N, BniB08g067860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1194 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1248 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026597 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4439, BH02.4478, CH02.4525 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1BG0065810, gene-QOZ80_1BG0095770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0314170.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057720 |
| Poaceae | Oryza coarctata | 1 | Oco02G030580 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g70920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G395800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403170 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G001580, Chr05G032890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G724200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG064620, gene_TRIDC3BG072950 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G457400.1, TraesCS3B02G497300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb142010_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28221 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11888 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.663, evm.TU.LG22.1261 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7521 |
| Salicaceae | Populus euphratica | 3 | populus_peu13388, populus_peu15721, populus_peu34273 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132605704, gene-LOC132605708, gene-LOC132644298 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI006323400, SOLCI006610600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107013940, gene-LOC107015883, gene-LOC107021954 |