Basic Information
Locus ID:
Sbi_jg61629
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 97900272 | 97906502 | + | Sbi_jg61629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 100,595.08 Da | 56.29 | 47.89 | -1.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 412 | 439 | 2.7E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 378 | 406 | 2.3E-10 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 371 | 407 | 2.28E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 409 | 440 | 2.4E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 370 | 408 | 5.6E-16 | - |
| SMART | SM00547 | zf_4 | 380 | 404 | 2.9E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 413 | 437 | 2.2E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 411 | 440 | 9.450083 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 378 | 407 | 10.274413 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 415 | 434 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 382 | 401 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 887 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 791 | 829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 832 | 846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 887 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 477 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010674734.3 | uncharacterized protein LOC104890827 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R1A6 | RanBP2-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology