Basic Information
Locus ID:
Sbi_jg61590
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 97314809 | 97323211 | + | Sbi_jg61590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 33,664.39 Da | 65.25 | 71.08 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 25 | 75 | 2.8E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 97 | 2.29E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 102 | 8.0E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 25 | 75 | 5.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 25 | 76 | 11.81064 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 41 | 50 | - | IPR017907 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021742470.1 | uncharacterized protein LOC110708605 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9RSZ2 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26590 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10451, gene_24917 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005822 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g081650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17041, Sbi_jg61590 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg317 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008382 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24570, Sgl29734 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009509, gene:ENSEOMG00000029771 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0008840, CQ.Regalona.r1.4BG0008950 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30084940, pistato.v30085240, pistato.v30085270 ... |
| Apiaceae | Apium graveolens | 1 | Ag1G00458 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007550 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708012 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_07.1560.V1.1, AsparagusV1_Unassigned.678.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G33338 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G05250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021312m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g04100.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g058320.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1229 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1282 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g05490 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0181s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g22500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2409 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06717 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.316, BH01.408, CH01.261 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0211320, gene-QOZ80_3BG0256470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0523040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_060948 |
| Poaceae | Oryza coarctata | 2 | Oco05G026820, Oco06G027810 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g59540.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G039300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105644, Pt_Chr0105670 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G031060, Chr07G030110 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G644500, Tel5E01G726800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG057710, gene_TRIDC5AG066080 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS3D02G400900.1.cds1, TraesCS5A02G460200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb079450_P001, Zm00001eb212380_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16547 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2522 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG08.629, evm.TU.LG13.1405, evm.TU.LG22.1223 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11450 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.160 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8093 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5103 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5237 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.117 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011074 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7842 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-147 |
| Salicaceae | Populus euphratica | 1 | populus_peu13429 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645884 |
| Solanaceae | Solanum chilense | 1 | SOLCI000021400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012794 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24452_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2330 |
| Zosteraceae | Zostera marina | 1 | Zosma03g17060.v3.1 |