Basic Information
Locus ID:
Sbi_jg61568
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 96676089 | 96676999 | - | Sbi_jg61568 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.90 | 29,126.10 Da | 48.83 | 77.18 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 248 | 255 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010694616.2 | E3 ubiquitin-protein ligase ATL6 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0J8BDS9 | RING-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g094390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17018, Sbi_jg17019, Sbi_jg61568, Sbi_jg61569 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg298, Seu_jg299 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008347 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0009140 |