halophFGD

Basic Information

Locus ID: Sbi_jg61473

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: phosphatase 2A 55 kDa regulatory subunit B

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000010l	94597228	94599686	+	Sbi_jg61473

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.68	8,678.92 Da	45.37	74.93	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	13	41	5.0E-15	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	42	70	5.0E-15	IPR000009

Gene Ontology

Molecular Function:

GO:0019888 (protein phosphatase regulator activity)

Cellular Component:

GO:0000159 (protein phosphatase type 2A complex)

KEGG Pathway

KO Term:

K04354 (serine/threonine-protein phosphatase 2A regulatory subunit B)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04391 (Hippo signaling pathway - fly) map04391 (Hippo signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G51690.2	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform. 55 kDa B regulatory subunit of phosphatase 2A mRNA,
RefSeq	XP_020253535.1	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Asparagus officinalis]
Swiss-Prot	A2X2K3	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2
TrEMBL	A0A8S9KJ82	WD_REPEATS_REGION domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q70_00042760 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg2666, Sbi_jg61471, Sbi_jg61473
Apiaceae	Apium graveolens	2	Ag3G02863, Ag6G01409
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.306.V1.1, AsparagusV1_Unassigned.1123.V1.1
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG08.1054