Basic Information
Locus ID:
Sbi_jg61417
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 93013209 | 93017278 | - | Sbi_jg61417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 67,979.64 Da | 51.91 | 95.87 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 24 | 63 | 1.2E-18 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 84 | 129 | 6.4E-24 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 41 | 552 | 6.02E-34 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 62 | 4.6E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 63 | 593 | 7.6E-177 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 146 | 171 | 160.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 388 | 412 | 0.4 | IPR006553 |
| SMART | SM00256 | fbox_2 | 26 | 67 | 4.4E-6 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 121 | 145 | 64.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 497 | 522 | 200.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021773054.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Chenopodium quinoa] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KPI2 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology