halophFGD

Basic Information

Locus ID: Sbi_jg61200

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000010l	85564860	85577056	+	Sbi_jg61200

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.26	61,454.01 Da	42.00	83.37	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02365	No apical meristem (NAM) protein	103	157	1.1E-4	IPR003441
SUPERFAMILY	SSF101941	NAC domain	98	150	1.57E-7	IPR036093
SUPERFAMILY	SSF52047	RNI-like	393	473	9.42E-6	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	349	484	1.4E-8	IPR032675
MobiDBLite	mobidb-lite	consensus disorder prediction	72	92	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	232	246	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	72	94	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	225	246	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003677 (DNA binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021759699.1	F-box/LRR-repeat protein At3g48880-like [Chenopodium quinoa]	0
TrEMBL	A0A803LIZ8	F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	3	gene_12150, gene_4483, gene_7164
Amaranthaceae	Atriplex hortensis	9	Ah004682, Ah016056, Ah032331, Ah032336, Ah034082, Ah034094 ... Ah034101, Ah034102, Ah034103
Amaranthaceae	Beta vulgaris	2	BVRB_1g000880, BVRB_9g216740
Amaranthaceae	Salicornia bigelovii	13	Sbi_jg40828, Sbi_jg40829, Sbi_jg61155, Sbi_jg61156 ... Sbi_jg61162, Sbi_jg61163, Sbi_jg61164, Sbi_jg61169, Sbi_jg61182, Sbi_jg61188, Sbi_jg61194, Sbi_jg61200, Sbi_jg61206
Amaranthaceae	Salicornia europaea	3	Seu_jg22918, Seu_jg22926, Seu_jg22927
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00022496
Amaranthaceae	Suaeda glauca	9	Sgl23009, Sgl28119, Sgl32537, Sgl37813, Sgl70843, Sgl70846 ... Sgl74440, Sgl74443, Sgl74444
Amaranthaceae	Chenopodium album	16	gene:ENSEOMG00000011497, gene:ENSEOMG00000016296 ... gene:ENSEOMG00000018532, gene:ENSEOMG00000027970, gene:ENSEOMG00000036621, gene:ENSEOMG00000037812, gene:ENSEOMG00000038191, gene:ENSEOMG00000038282, gene:ENSEOMG00000039299, gene:ENSEOMG00000039667, gene:ENSEOMG00000040171, gene:ENSEOMG00000040941, gene:ENSEOMG00000042038, gene:ENSEOMG00000043621, gene:ENSEOMG00000048844, gene:ENSEOMG00000050358
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.1BG0002070, CQ.Regalona.r1.2BG0007820 ... CQ.Regalona.r1.4AG0013450, CQ.Regalona.r1.4AG0018280, CQ.Regalona.r1.4AG0018320, CQ.Regalona.r1.4AG0018370, CQ.Regalona.r1.4AG0018400, CQ.Regalona.r1.4BG0018870, CQ.Regalona.r1.9AG0004650, CQ.Regalona.r1.9AG0004690, CQ.Regalona.r1.9AG0004730, CQ.Regalona.r1.9BG0017570
Salicaceae	Populus euphratica	1	populus_peu30353