Basic Information
Locus ID:
Sbi_jg61105
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 83530391 | 83531502 | + | Sbi_jg61105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 9,101.61 Da | 48.51 | 95.29 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 69 | 4.6E-6 | IPR013083 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04510.1 | MOS4-associated complex 3A. Encodes MAC3A, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. | 0 |
| RefSeq | XP_009605789.1 | pre-mRNA-processing factor 19 homolog 1-like [Nicotiana tomentosiformis] | 0 |
| Q94BR4 | Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=PRP19A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9G914 | Pre-mRNA-processing factor 19 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25796 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg49689, Sbi_jg61105 |
| Brassicaceae | Brassica nigra | 1 | BniB03g000920.2N |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21216, nbis-gene-58197 |