halophFGD

Basic Information

Locus ID: Sbi_jg60437

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: fasciclin-like arabinogalactan protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000010l	46143889	46148471	-	Sbi_jg60437

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.47	28,689.46 Da	35.61	87.34	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02469	Fasciclin domain	65	195	2.7E-9	IPR000782
SUPERFAMILY	SSF82153	FAS1 domain	51	196	3.79E-14	IPR036378
Gene3D	G3DSA:2.30.180.10	FAS1 domain	58	196	9.9E-7	IPR036378
SMART	SM00554	fasc_3	91	196	2.1E-12	IPR000782

Best hit

Source	Best Hit ID	Description
TAIR	AT4G12730.1	FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds
RefSeq	XP_021766350.1	fasciclin-like arabinogalactan protein 2 [Chenopodium quinoa]
Swiss-Prot	Q9SU13	Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1
TrEMBL	A0A803MGL8	Fasciclin-like arabinogalactan protein 2 OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg19047, jg21610, jg24104, jg24609, jg29269, jg29270 ... jg37462, jg37463, jg38433
Aizoaceae	Mesembryanthemum crystallinum	3	gene_23237, gene_25615, gene_7140
Amaranthaceae	Atriplex hortensis	3	Ah009061, Ah023157, Ah038055
Amaranthaceae	Beta vulgaris	2	BVRB_4g090450, BVRB_9g206520
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18521, Sbi_jg36917, Sbi_jg4353, Sbi_jg49475 ... Sbi_jg51286, Sbi_jg60437
Amaranthaceae	Salicornia europaea	3	Seu_jg24528, Seu_jg4795, Seu_jg5768
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000314, GOSA_00015754, GOSA_00017328
Amaranthaceae	Suaeda glauca	6	Sgl11244, Sgl16638, Sgl23556, Sgl28686, Sgl78328, Sgl80822
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000010711, gene:ENSEOMG00000014465 ... gene:ENSEOMG00000018292, gene:ENSEOMG00000029722, gene:ENSEOMG00000033712, gene:ENSEOMG00000037420, gene:ENSEOMG00000040740, gene:ENSEOMG00000048723, gene:ENSEOMG00000052541
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0006080, CQ.Regalona.r1.2BG0001100 ... CQ.Regalona.r1.2BG0023650, CQ.Regalona.r1.4BG0025970, CQ.Regalona.r1.9AG0003470, CQ.Regalona.r1.9BG0018920
Anacardiaceae	Pistacia vera	4	pistato.v30003200, pistato.v30017100, pistato.v30152910 ... pistato.v30154870
Apiaceae	Apium graveolens	4	Ag11G03726, Ag2G00090, Ag2G00576, Ag6G00127
Arecaceae	Cocos nucifera	5	COCNU_01G006180, COCNU_01G013790, COCNU_10G005640 ... COCNU_11G005810, contig69452132G000010
Arecaceae	Phoenix dactylifera	9	gene-LOC103699822, gene-LOC103706551, gene-LOC103712760 ... gene-LOC103716887, gene-LOC103721306, gene-LOC113461325, gene-LOC120107389, gene-LOC120110831, gene-LOC120111351
Asteraceae	Flaveria trinervia	7	Ftri11G25595, Ftri14G19212, Ftri16G31542, Ftri2G11958 ... Ftri3G02476, Ftri7G05315, Ftri7G20438
Brassicaceae	Arabidopsis thaliana	4	AT2G45470.1, AT3G60900.1, AT4G12730.1, AT5G55730.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001463m.g.v1.0, Thhalv10005998m.g.v1.0 ... Thhalv10013639m.g.v1.0, Thhalv10025352m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp4g27500.v2.2, Sp5g02350.v2.2, Sp6g17640.v2.2 ... Sp7g08820.v2.2
Brassicaceae	Brassica nigra	8	BniB02g034440.2N, BniB05g048720.2N, BniB06g003960.2N ... BniB06g009800.2N, BniB06g053430.2N, BniB08g014970.2N, BniB08g062130.2N, BniB08g075170.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1479, Ceq02G0472, Ceq02G2265
Casuarinaceae	Casuarina glauca	3	Cgl01G1646, Cgl02G0503, Cgl02G2355
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno02g06080, gene.Cymno02g08540, gene.Cymno03g07780 ... gene.Cymno06g10100, gene.Cymno15g01210
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g05600, gene.Thate03g25400, gene.Thate08g06510 ... gene.Thate09g17120
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-9041, nbisL1-mrna-9805
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.209, evm.TU.LG04.2262, evm.TU.LG05.2037
Plantaginaceae	Plantago ovata	3	Pov_00016790, Pov_00031759, Pov_00037912
Plumbaginaceae	Limonium bicolor	4	Lb2G10402, Lb2G10408, Lb3G19716, Lb4G25781
Poaceae	Echinochloa crus-galli	13	AH01.3600, AH01.5163, AH07.3306, AH09.2006, BH01.5047 ... BH07.1758, BH07.3124, BH08.1086, BH09.2165, CH07.1609, CH07.3193, CH08.1183, CH09.2310
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_3AG0232120, gene-QOZ80_3BG0295820 ... gene-QOZ80_4AG0306730, gene-QOZ80_4BG0337730, gene-QOZ80_8AG0627250, gene-QOZ80_8BG0654670, gene-QOZ80_9AG0683250, gene-QOZ80_9BG0708880
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0186770.1.CDS1 ... HORVU.MOREX.r3.4HG0410750.1.CDS1, HORVU.MOREX.r3.5HG0469340.1, HORVU.MOREX.r3.5HG0493200.1, HORVU.MOREX.r3.6HG0611180.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_004150, gene-QYE76_006458, gene-QYE76_025242 ... gene-QYE76_045683, gene-QYE76_071199
Poaceae	Oryza coarctata	9	Oco03G020420, Oco04G021070, Oco05G001670, Oco06G001650 ... Oco07G013680, Oco08G013150, Oco16G005970, Oco17G001060, Oco18G000820
Poaceae	Oryza sativa	5	LOC_Os02g49420.1, LOC_Os03g03600.1, LOC_Os04g48490.1 ... LOC_Os08g23180.1, LOC_Os09g07350.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G496300, gene-BS78_02G160300 ... gene-BS78_04G261100, gene-BS78_06G194300, gene-BS78_07G208300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0100535, Pt_Chr0701487, Pt_Chr0705062, Pt_Chr0705086
Poaceae	Sporobolus alterniflorus	10	Chr01G038380, Chr09G021210, Chr12G001040, Chr13G005480 ... Chr14G009470, Chr16G012690, Chr17G012030, Chr21G009570, Chr23G006090, Chr26G013500
Poaceae	Thinopyrum elongatum	6	Tel2E01G692900, Tel4E01G529100, Tel5E01G284600 ... Tel5E01G285000, Tel5E01G447100, Tel6E01G524100
Poaceae	Triticum dicoccoides	10	gene_TRIDC2AG057650, gene_TRIDC2BG060480 ... gene_TRIDC4BG054080, gene_TRIDC5AG027590, gene_TRIDC5AG042190, gene_TRIDC5AG069910, gene_TRIDC5BG029010, gene_TRIDC5BG046060, gene_TRIDC6AG043930, gene_TRIDC6BG051570
Poaceae	Triticum aestivum	15	TraesCS2A02G398500.1.cds1, TraesCS2B02G416400.1.cds1 ... TraesCS2D02G396000.1.cds1, TraesCS4B02G321200.1.cds1, TraesCS4D02G317800.1.cds1, TraesCS5A02G167900.1, TraesCS5A02G280900.1, TraesCS5A02G490900.1.cds1, TraesCS5B02G164700.1, TraesCS5B02G280000.1, TraesCS5D02G172100.1, TraesCS5D02G287800.1, TraesCS6A02G287600.1.cds1, TraesCS6B02G316900.1.cds1, TraesCS6D02G268300.1.cds1
Poaceae	Zea mays	5	Zm00001eb073440_P001, Zm00001eb189500_P001 ... Zm00001eb282320_P001, Zm00001eb309110_P001, Zm00001eb380720_P002
Poaceae	Zoysia japonica	6	nbis-gene-24560, nbis-gene-3055, nbis-gene-45855 ... nbis-gene-4642, nbis-gene-54004, nbis-gene-5611
Poaceae	Zoysia macrostachya	6	Zma_g2170, Zma_g21817, Zma_g22807, Zma_g29506, Zma_g31951 ... Zma_g4516
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.25, evm.TU.LG02.593, evm.TU.LG03.2072 ... evm.TU.LG04.2394, evm.TU.LG04.723, evm.TU.LG09.2085, evm.TU.LG14.371, evm.TU.LG14.372
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g19520, gene.Posoc02g22100, gene.Posoc03g08310 ... gene.Posoc07g02670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_5_RagTag.1634, evm.TU.Scaffold_7_RagTag.72 ... evm.TU.Scaffold_9_RagTag.372
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-10926, nbisL1-mrna-12111, nbisL1-mrna-19680 ... nbisL1-mrna-21720
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-16278, nbisL1-mrna-4010, nbisL1-mrna-7400
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-10883, nbisL1-mrna-7131
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000003l.105, evm.TU.utg000006l.938 ... evm.TU.utg000028l.47
Rhizophoraceae	Kandelia obovata	3	Maker00009264, Maker00010551, Maker00013523
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10470, nbisL1-mrna-19487, nbisL1-mrna-8002
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-12707, nbisL1-mrna-15570, nbisL1-mrna-22593 ... nbisL1-mrna-25059
Salicaceae	Populus euphratica	4	populus_peu00902, populus_peu17813, populus_peu26883 ... populus_peu27826
Solanaceae	Lycium barbarum	5	gene-LOC132618366, gene-LOC132618800, gene-LOC132627902 ... gene-LOC132638727, gene-LOC132645686
Solanaceae	Solanum chilense	5	SOLCI001659300, SOLCI002309000, SOLCI003778700 ... SOLCI006743500, SOLCI007386100
Solanaceae	Solanum pennellii	5	gene-LOC107002108, gene-LOC107006764, gene-LOC107007083 ... gene-LOC107024628, gene-LOC107026110
Tamaricaceae	Reaumuria soongarica	3	STRG.22899_chr05_+, STRG.24622_chr08_-, STRG.29246_chr11_+
Tamaricaceae	Tamarix chinensis	3	TC01G1901, TC03G2688, TC05G2612
Zosteraceae	Zostera marina	7	Zosma02g05340.v3.1, Zosma03g03930.v3.1, Zosma04g17720.v3.1 ... Zosma05g22030.v3.1, Zosma06g03240.v3.1, Zosma06g20480.v3.1, Zosma06g27070.v3.1