Basic Information
Locus ID:
Sbi_jg6027
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Polyubiquitin-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 71984671 | 71986302 | - | Sbi_jg6027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 38,711.70 Da | 40.90 | 92.32 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 134 | 192 | 4.35371E-6 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 271 | 343 | 8.56E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 134 | 193 | 1.4E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 185 | 267 | 2.07E-6 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 118 | 198 | 1.3E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 268 | 345 | 5.9E-7 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 119 | 192 | 10.309861 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 271 | 340 | 9.41707 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019232995.1 | PREDICTED: polyubiquitin-like isoform X2 [Nicotiana attenuata] | 0 |
| TrEMBL | A0A1J6KC86 | Polyubiquitin 4 OS=Nicotiana attenuata OX=49451 GN=UBQ4_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |