Basic Information
Locus ID:
Sbi_jg6025
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 71894290 | 71899624 | - | Sbi_jg6025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 36,956.48 Da | 41.92 | 94.09 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 119 | 169 | 0.00372824 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 251 | 317 | 4.53451E-4 | - |
| Pfam | PF00240 | Ubiquitin family | 44 | 87 | 5.2E-5 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 174 | 247 | 2.7E-7 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 96 | 169 | 9.01E-7 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 225 | 318 | 3.83E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 36 | 88 | 6.91E-7 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 249 | 321 | 1.3E-5 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 172 | 248 | 9.3E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 3 | 91 | 1.0E-6 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 99 | 171 | 9.025113 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048497256.1 | polyubiquitin [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QID1 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |