Basic Information
Locus ID:
Sbi_jg6021
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 71782535 | 71789082 | + | Sbi_jg6021 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 37,820.61 Da | 30.84 | 95.98 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 132 | 183 | 2.68082E-5 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 264 | 331 | 5.93195E-4 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 240 | 331 | 3.97E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 119 | 185 | 1.04E-7 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 110 | 189 | 3.2E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 260 | 332 | 1.9E-7 | - |
| SMART | SM00213 | ubq_7 | 262 | 333 | 4.2 | IPR000626 |
| SMART | SM00213 | ubq_7 | 109 | 185 | 0.37 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 262 | 331 | 9.983231 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09790.1 | ubiquitin 8. encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. | 0 |
| RefSeq | XP_021847649.1 | polyubiquitin 8-like [Spinacia oleracea] | 0 |
| Q39256 | Polyubiquitin 8 OS=Arabidopsis thaliana OX=3702 GN=UBQ8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9QID1 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |