Basic Information
Locus ID:
Sbi_jg59960
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 23392264 | 23393217 | - | Sbi_jg59960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 34,972.39 Da | 78.53 | 82.71 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 126 | 169 | 1.04884E-16 | - |
| Pfam | PF13639 | Ring finger domain | 126 | 169 | 9.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 106 | 181 | 3.79E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 174 | 5.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 127 | 168 | 2.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 169 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 217 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_010693585.2 | RING-H2 finger protein ATL2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LLW1 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology