Basic Information
Locus ID:
Sbi_jg5983
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 70698322 | 70705920 | + | Sbi_jg5983 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 52,693.35 Da | 55.57 | 79.53 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 56 | 127 | 1.0E-9 | IPR020683 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 433 | 481 | 2.2E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 435 | 481 | 1.03E-9 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 9 | 133 | 9.64E-28 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 414 | 486 | 2.4E-15 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 2 | 135 | 7.6E-28 | IPR036770 |
| SMART | SM00248 | ANK_2a | 75 | 104 | 9.4E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 39 | 69 | 0.0093 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 436 | 475 | 11.146755 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 39 | 72 | 9.93829 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 75 | 107 | 13.78453 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 75 | 101 | 12.832462 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 39 | 69 | 9.303788 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 385 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23280.1 | XB3 ortholog 5 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021721902.1 | putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Chenopodium quinoa] | 0 |
| Q4FE47 | Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana OX=3702 GN=XBAT35 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LMQ1 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11083, jg12716, jg27772 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_19292, gene_19293, gene_3028 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000150, Ah018342 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_3g048930, BVRB_5g121380, BVRB_5g121390 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg14588, Sbi_jg31388, Sbi_jg37834, Sbi_jg57886 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg10428, Seu_jg25517, Seu_jg28142 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00006113, GOSA_00026712, GOSA_00026713 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl00977, Sgl05932, Sgl06036, Sgl06044, Sgl54454, Sgl54455 ... |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000003855, gene:ENSEOMG00000005277 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0008130, CQ.Regalona.r1.3BG0008260 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30016280, pistato.v30238910 |
| Apiaceae | Apium graveolens | 2 | Ag1G01780, Ag8G01509 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G000490, COCNU_10G000510 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703941, gene-LOC103716062 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.105.V1.1, AsparagusV1_04.83.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G23003, Ftri7G19917 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G23280.1, AT4G14365.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10020731m.g.v1.0, Thhalv10025615m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20940.v2.2, Sp7g12440.v2.2 |
| Brassicaceae | Brassica nigra | 8 | BniB01g038760.2N, BniB01g038790.2N, BniB04g039220.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq01G0126, Ceq01G0129, Ceq01G0130, Ceq06G1330, Ceq07G1103 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G0113, Cgl06G1397, Cgl07G0383, Cgl07G1168 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01980 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0054s00004.v1.0, Dusal.0334s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g01610, gene.Thate08g24870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4180 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1346, evm.TU.LG11.798 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008324 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G03074, Lb2G10273, Lb3G19047 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.985, BH03.1138, CH03.1281 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0565310, gene-QOZ80_7BG0596730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0019920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041593 |
| Poaceae | Oryza coarctata | 2 | Oco13G006290, Oco14G006850 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g26490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G090100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304048 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr19G006760, Chr19G006810, Chr27G010160 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G172400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG012570, gene_TRIDC1BG015390 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G088100.2, TraesCS1B02G107100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb306280_P002 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-1164, nbis-gene-1165, nbis-gene-43209 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5062, Zma_g6375 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.2924, evm.TU.LG01.2925, evm.TU.LG04.2536 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g00180, gene.Posoc10g07580 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_6_RagTag.871, evm.TU.Scaffold_9_RagTag.1007 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15808, nbisL1-mrna-21178 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17966, nbisL1-mrna-20563 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18302, nbisL1-mrna-743 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.460, evm.TU.utg000011l.536 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007463, Maker00009735 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1447, nbisL1-mrna-15227 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-4270, nbisL1-mrna-5041 |
| Salicaceae | Populus euphratica | 6 | populus_peu07529, populus_peu07530, populus_peu15197 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606519, gene-LOC132611270, gene-LOC132611272 |
| Solanaceae | Solanum chilense | 2 | SOLCI001181000, SOLCI004306200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107022031, gene-LOC107030942 |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.16143_chr09_+, STRG.14146_chr08_-, gene_17443 |
| Tamaricaceae | Tamarix chinensis | 5 | TC05G1717, TC06G2195, TC07G2416, TC07G2418, TC07G2419 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38960.v3.1 |