Basic Information
Locus ID:
Sbi_jg59490
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 9809824 | 9814634 | - | Sbi_jg59490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 50,309.32 Da | 43.71 | 69.94 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 22 | 107 | 6.99878E-47 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 245 | 309 | 1.09218E-24 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 245 | 312 | 3.3E-17 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 24 | 107 | 2.1E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 15 | 117 | 5.49E-28 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 237 | 317 | 1.57E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 227 | 321 | 8.0E-23 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 14 | 123 | 6.7E-26 | IPR036431 |
| SMART | SM00501 | bright_3 | 21 | 112 | 2.1E-24 | IPR001606 |
| SMART | SM01014 | ARID_2 | 17 | 107 | 3.1E-26 | - |
| SMART | SM00398 | hmgende2 | 244 | 313 | 6.4E-21 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 245 | 312 | 16.002832 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 20 | 111 | 25.089661 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 152 | - | - |
| Coils | Coil | Coil | 294 | 314 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021745861.1 | high mobility group B protein 15-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LZC3 | High mobility group B protein 15-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology