Basic Information
Locus ID:
Sbi_jg59412
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 8599800 | 8607493 | - | Sbi_jg59412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 46,208.73 Da | 41.05 | 95.27 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 246 | 376 | 9.08706E-64 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 35 | 235 | 4.89041E-122 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 58 | 220 | 8.2E-41 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 259 | 367 | 3.2E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 101 | 389 | 3.36E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 23 | 241 | 8.7E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 242 | 406 | 3.7E-61 | IPR027417 |
| SMART | SM00490 | helicmild6 | 286 | 367 | 9.3E-36 | IPR001650 |
| SMART | SM00487 | ultradead3 | 52 | 249 | 2.0E-54 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 245 | 406 | 27.468765 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 33 | 61 | 10.489026 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 64 | 234 | 27.271292 | IPR014001 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_010687436.1 | eukaryotic initiation factor 4A-3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94A52 | Eukaryotic initiation factor 4A-III homolog OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803MKD4 | RNA helicase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology