Basic Information
Locus ID:
Sbi_jg59331
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
F-box family protein-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 7014842 | 7016904 | + | Sbi_jg59331 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 61,781.54 Da | 41.24 | 83.88 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 62 | 99 | 2.5E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 62 | 91 | 2.62E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 56 | 92 | 9.1E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 30 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TrEMBL | A0A803NDV6 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 4 | Ah025728, Ah025731, Ah025734, Ah025748 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg59328, Sbi_jg59330, Sbi_jg59331, Sbi_jg59332 ... |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg13336, Seu_jg23585, Seu_jg23587, Seu_jg23591 ... |
| Amaranthaceae | Suaeda glauca | 1 | Sgl66969 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5BG0019180, CQ.Regalona.r1.6AG0014140 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709460 |