Basic Information
Locus ID:
Sbi_jg59106
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 3452226 | 3456827 | - | Sbi_jg59106 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 31,774.88 Da | 67.88 | 55.56 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
KEGG Pathway
Pathway:
ko00140 (Steroid hormone biosynthesis)
map00140 (Steroid hormone biosynthesis)
ko00380 (Tryptophan metabolism)
map00380 (Tryptophan metabolism)
ko00830 (Retinol metabolism)
map00830 (Retinol metabolism)
ko00980 (Metabolism of xenobiotics by cytochrome P450)
map00980 (Metabolism of xenobiotics by cytochrome P450)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
Reaction:
R02354 (Estrone + H+ + Oxygen + NADH <=> 2-Hydroxyestrone + NAD+ + H2O)
R02355 (Estrone + H+ + Oxygen + NADPH <=> 2-Hydroxyestrone + NADP+ + H2O)
R03089 (Estradiol-17beta + H+ + Oxygen + NADPH <=> Estriol + NADP+ + H2O)
R03408 (Dehydroepiandrosterone + H+ + Oxygen + NADPH <=> 16alpha-Hydroxydehydroepiandrosterone + NADP+ + H2O)
R03629 (Melatonin + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> 6-Hydroxymelatonin + [Oxidized NADPH---hemoprotein reductase] + H2O)
R07000 (Naphthalene + NADPH + Oxygen + H+ <=> (1R,2S)-Naphthalene 1,2-oxide + NADP+ + H2O)
R07001 (Naphthalene + NADPH + Oxygen + H+ <=> (1S,2R)-Naphthalene 1,2-oxide + NADP+ + H2O)
R07021 (1-Nitronaphthalene + NADPH + Oxygen + H+ <=> 1-Nitronaphthalene-7,8-oxide + NADP+ + H2O)
R07022 (1-Nitronaphthalene + NADPH + Oxygen + H+ <=> 1-Nitronaphthalene-5,6-oxide + NADP+ + H2O)
R07079 (Benzo[a]pyrene + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-9,10-oxide + NADP+ + H2O)
R07080 (Benzo[a]pyrene + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-7,8-oxide + NADP+ + H2O)
R07081 (Benzo[a]pyrene + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-4,5-oxide + NADP+ + H2O)
R07085 (Benzo[a]pyrene-7,8-dihydrodiol + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-7,8-dihydrodiol-9,10-oxide + NADP+ + H2O)
R07087 (9-Hydroxybenzo[a]pyrene + NADPH + Oxygen + H+ <=> 9-Hydroxybenzo[a]pyrene-4,5-oxide + NADP+ + H2O)
R07098 (Trichloroethene + NADPH + Oxygen + H+ <=> TCE epoxide + NADP+ + H2O)
R07099 (Trichloroethene + NADPH + Oxygen + H+ <=> Chloral + NADP+ + H2O)
R08390 (Retinoate + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> all-trans-18-Hydroxyretinoic acid + [Oxidized NADPH---hemoprotein reductase] + H2O)
R08392 (Retinoate + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> all-trans-4-Hydroxyretinoic acid + [Oxidized NADPH---hemoprotein reductase] + H2O)
R09418 (trans-3,4-Dihydro-3,4-dihydroxy-7,12-dimethylbenz[a]anthracene + Oxygen + NADPH + H+ <=> (1aalpha,2beta,3alpha,11calpha)-1a,2,3,11c-Tetrahydro-6,11-dimethylbenzo[6,7]phenanthro[3,4-b]oxirene-2,3-diol + H2O + NADP+)
R09423 (4-(N-Nitrosomethylamino)-1-(3-pyridyl)-1-butanone + Oxygen + NADPH + H+ <=> 4-Hydroxy-4-(methylnitrosoamino)-1-(3-pyridinyl)-1-butanone + H2O + NADP+)
R09442 (7,12-Dimethylbenz[a]anthracene + Oxygen + NADPH + H+ <=> 7,12-Dimethylbenz[a]anthracene 5,6-oxide + H2O + NADP+)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021721405.1 | uncharacterized protein LOC110688967 [Chenopodium quinoa] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 53 | Sbi_jg10635, Sbi_jg10720, Sbi_jg1293, Sbi_jg13061 ... |