Basic Information
Locus ID:
Sbi_jg58837
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
CPK30
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 105132612 | 105135410 | + | Sbi_jg58837 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 31,702.28 Da | 45.49 | 86.19 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 66 | 269 | 9.40049E-111 | - |
| Pfam | PF00069 | Protein kinase domain | 67 | 268 | 7.6E-62 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 64 | 270 | 2.29E-70 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 59 | 281 | 7.0E-71 | - |
| SMART | SM00220 | serkin_6 | 67 | 281 | 1.3E-63 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 67 | 286 | 42.124279 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 73 | 96 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 187 | 199 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_010678598.1 | calcium-dependent protein kinase 10 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M9V8 | Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CPK10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M1C0 | Calcium-dependent protein kinase 30 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg58837 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012123 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004710, gene:ENSEOMG00000007423 ... |
| Apiaceae | Apium graveolens | 1 | Ag1G00766 |
| Brassicaceae | Brassica nigra | 1 | BniS02554g190.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036522 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.84, Contig80_1.3 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006613 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600906 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G009170, Chr18G009200 |
| Poaceae | Zea mays | 1 | Zm00001eb351760_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47862 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g08160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1077 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18439 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5700 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-798 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606690 |
| Zosteraceae | Zostera marina | 2 | Zosma03g11280.v3.1, Zosma06g15170.v3.1 |