Basic Information
Locus ID:
Sbi_jg58828
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 104931739 | 104949510 | + | Sbi_jg58828 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 140,036.13 Da | 55.76 | 79.49 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 603 | 749 | 1.08148E-18 | - |
| CDD | cd12108 | Hr-like | 39 | 169 | 1.44571E-22 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1112 | 1154 | 1.72628E-19 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 603 | 750 | 5.6E-6 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 982 | 1057 | 4.6E-17 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1159 | 1216 | 2.9E-21 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 36 | 171 | 3.2E-8 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1110 | 1153 | 5.2E-8 | IPR001841 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 974 | 1038 | 8.63E-8 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1103 | 1158 | 2.4E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1048 | 1105 | 1.44E-16 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 1183 | 1218 | 5.3E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 35 | 188 | 1.3E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1105 | 1156 | 1.9E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 593 | 800 | 6.6E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 293 | 441 | 5.3E-6 | - |
| SMART | SM00184 | ring_2 | 1112 | 1153 | 2.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1112 | 1154 | 11.648357 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1047 | 1111 | 27.267435 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 975 | 1044 | 23.914679 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_021761695.1 | zinc finger protein BRUTUS-like At1g18910 isoform X1 [Chenopodium quinoa] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RX52 | Zinc finger protein BRUTUS-like At1g18910 OS=Spinacia oleracea OX=3562 GN=SOVF_024830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology