Basic Information
Locus ID:
Sbi_jg58736
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 103649458 | 103654619 | + | Sbi_jg58736 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 32,509.74 Da | 50.99 | 84.16 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 13 | 58 | 3.0E-7 | IPR001810 |
| Pfam | PF14299 | Phloem protein 2 | 105 | 284 | 4.4E-34 | IPR025886 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 111 | 8.63E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 109 | 1.7E-6 | - |
| SMART | SM00256 | fbox_2 | 18 | 58 | 1.9E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 58 | 11.537539 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02240.1 | F-box family protein. | 0 |
| RefSeq | XP_021718953.1 | putative F-box protein PP2-B12 [Chenopodium quinoa] | 0 |
| Q3E6P4 | F-box protein At2g02240 OS=Arabidopsis thaliana OX=3702 GN=At2g02240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L8N8 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19528 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah000637, Ah000638, Ah000640, Ah000641 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30511, Sbi_jg58736 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28606 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014960 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55244, Sgl60504 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007243, gene:ENSEOMG00000022548 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0022820, CQ.Regalona.r1.5BG0024210 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.919, evm.TU.LG09.1052, evm.TU.LG26.945 |