Basic Information
Locus ID:
Sbi_jg58538
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 100951609 | 100961806 | - | Sbi_jg58538 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 189,905.45 Da | 46.96 | 66.70 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 1100 | 1139 | 4.32674E-16 | - |
| Pfam | PF00628 | PHD-finger | 1100 | 1142 | 1.7E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 1022 | 1072 | 9.7E-20 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1285 | 1374 | 8.29E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1087 | 1145 | 1.75E-15 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1087 | 1207 | 3.4E-19 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 404 | 416 | 18.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 552 | 564 | 0.9 | IPR017956 |
| SMART | SM00249 | PHD_3 | 1099 | 1140 | 6.5E-13 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1141 | 1200 | 20.0 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 359 | 371 | 2.8 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 617 | 629 | 29.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 478 | 490 | 21.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 711 | 723 | 7.5 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1097 | 1142 | 10.202 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1100 | 1139 | - | IPR019786 |
| PRINTS | PR00929 | AT-hook-like domain signature | 550 | 561 | 6.4E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 478 | 488 | 6.4E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 615 | 625 | 6.4E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1463 | 1491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 812 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1498 | 1522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 920 | 948 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 718 | 746 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 967 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1523 | 1542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1456 | 1549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 983 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RSQ4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology