Basic Information
Locus ID:
Sbi_jg58092
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 94109795 | 94128353 | + | Sbi_jg58092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 45,432.92 Da | 50.52 | 64.49 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 265 | 403 | 5.25099E-74 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 266 | 402 | 1.6E-51 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 249 | 408 | 3.15E-63 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 257 | 406 | 1.4E-66 | IPR016135 |
| SMART | SM00212 | ubc_7 | 265 | 408 | 1.0E-68 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 262 | 408 | 60.410213 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 335 | 350 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 70 | - | - |
| Coils | Coil | Coil | 106 | 147 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_027123759.1 | ubiquitin-conjugating enzyme E2 2 [Coffea arabica] | 0 |
| P42745 | Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A072TRF9 | Ubiquitin-conjugating enzyme OS=Medicago truncatula OX=3880 GN=MTR_8g468530 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Sbi_jg58092.