HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Sbi_jg57981
Species & Taxonomic ID: Salicornia bigelovii & 46105
Genome Assembly:
Description: A Receptor for Ubiquitination Targets
Maps and Mapping Data
Chromosome Start End Strand ID
ptg000004l 92270109 92271587 - Sbi_jg57981
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.11 57,066.88 Da 47.90 85.73 -0.20
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 22 58 2.0E-4 IPR001810
SUPERFAMILY SSF81383 F-box domain 62 103 9.42E-5 IPR036047
SUPERFAMILY SSF81383 F-box domain 16 56 6.41E-7 IPR036047
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_045793019.1 F-box/LRR-repeat protein At4g14103-like [Trifolium pratense] 0
TrEMBL A0A803LTB6 F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Salicornia bigelovii 2 Sbi_jg31290, Sbi_jg57981
Amaranthaceae Salicornia europaea 1 Seu_jg25612
Amaranthaceae Suaeda glauca 2 Sgl04353, Sgl09422
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.