halophFGD

Basic Information

Locus ID: Sbi_jg57961

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000004l	91980404	91992422	-	Sbi_jg57961

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.63	28,261.86 Da	24.83	90.91	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05158	RNA polymerase Rpc34 subunit	41	155	2.3E-27	IPR007832
SUPERFAMILY	SSF46785	Winged helix DNA-binding domain	41	109	5.98E-10	IPR036390
Gene3D	G3DSA:1.10.10.10	-	23	101	6.5E-17	IPR036388

Gene Ontology

Biological Process:

GO:0006383 (transcription by RNA polymerase III)

Cellular Component:

GO:0005666 (RNA polymerase III complex)

KEGG Pathway

KO Term:

K03025 (DNA-directed RNA polymerase III subunit RPC6)

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00240 (Pyrimidine metabolism) map00240 (Pyrimidine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko03020 (RNA polymerase) map03020 (RNA polymerase) map04623 (Cytosolic DNA-sensing pathway)

Reaction:

R00435 (ATP + RNA <=> Diphosphate + RNA) R00441 (GTP + RNA <=> Diphosphate + RNA) R00442 (CTP + RNA <=> Diphosphate + RNA) R00443 (UTP + RNA <=> Diphosphate + RNA)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G23710.1	DNA binding;DNA-directed RNA polymerases.
RefSeq	XP_021768744.1	DNA-directed RNA polymerase III subunit RPC6-like [Chenopodium quinoa]
Swiss-Prot	P91529	Probable DNA-directed RNA polymerase III subunit RPC6 OS=Caenorhabditis elegans OX=6239 GN=W09C3.4 PE=3 SV=1
TrEMBL	A0A803M7H8	DNA-directed RNA polymerase III subunit RPC6 OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg36957, jg5577
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19264, gene_622
Amaranthaceae	Beta vulgaris	1	BVRB_5g121860
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg31325, Sbi_jg57961
Amaranthaceae	Salicornia europaea	1	Seu_jg25586
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004474
Amaranthaceae	Suaeda glauca	2	Sgl54529, Sgl59870
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000006201, gene:ENSEOMG00000021214 ... gene:ENSEOMG00000023247
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0009560, CQ.Regalona.r1.5BG0028630
Anacardiaceae	Pistacia vera	1	pistato.v30127940
Apiaceae	Apium graveolens	2	Ag1G01146, Ag9G01580
Arecaceae	Cocos nucifera	2	scaffold010820G000020, scaffold012968G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103724044
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.1360.V1.1
Asteraceae	Flaveria trinervia	1	Ftri14G23041
Brassicaceae	Arabidopsis thaliana	1	AT5G23710.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10005351m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g23520.v2.2
Brassicaceae	Brassica nigra	2	BniB02g076810.2N, BniB07g040580.2N
Casuarinaceae	Casuarina glauca	1	Cgl02G0311
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g12140
Dunaliellaceae	Dunaliella salina	1	Dusal.0099s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g21500
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.463
Plantaginaceae	Plantago ovata	2	Pov_00003140, Pov_00013573
Poaceae	Echinochloa crus-galli	6	AH06.2225, AH06.2226, BH06.2009, BH06.2010, CH06.2249 ... CH06.2250
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_6BG0497900
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.7HG0719600.1.CDS1 ... HORVU.MOREX.r3.7HG0719610.1.CDS1, HORVU.MOREX.r3.7HG0719640.1
Poaceae	Lolium multiflorum	1	gene-QYE76_034960
Poaceae	Oryza coarctata	1	Oco12G012520
Poaceae	Oryza sativa	1	LOC_Os06g40110.1
Poaceae	Paspalum vaginatum	2	gene-BS78_10G184000, gene-BS78_10G184400
Poaceae	Sporobolus alterniflorus	3	Chr02G029820, Chr05G007490, Chr0G008060
Poaceae	Thinopyrum elongatum	2	Tel7E01G637700, Tel7E01G637800
Poaceae	Triticum dicoccoides	3	gene_TRIDC7AG052520, gene_TRIDC7BG044950 ... gene_TRIDC7BG044960
Poaceae	Triticum aestivum	4	TraesCS7A02G376000.1, TraesCS7A02G376100.1 ... TraesCS7B02G277600.1.cds1, TraesCS7D02G372500.1.cds1
Poaceae	Zea mays	3	Zm00001eb276730_P001, Zm00001eb356740_P001 ... Zm00001eb386260_P001
Poaceae	Zoysia japonica	1	nbis-gene-10090
Poaceae	Zoysia macrostachya	1	Zma_g30783
Portulacaceae	Portulaca oleracea	1	evm.TU.LG09.1261
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g03170, gene.Posoc05g03210
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.1182
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-14684, nbisL1-mrna-6818
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14849
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21751
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000004l.134
Rhizophoraceae	Kandelia obovata	1	Maker00004087
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-16335
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-21384
Salicaceae	Populus euphratica	5	populus_peu04478, populus_peu04517, populus_peu04536 ... populus_peu12129, populus_peu35292
Solanaceae	Lycium barbarum	3	gene-LOC132602065, gene-LOC132610636, gene-LOC132621960
Solanaceae	Solanum chilense	1	SOLCI001877000
Solanaceae	Solanum pennellii	1	gene-LOC107026877
Tamaricaceae	Reaumuria soongarica	2	STRG.19266_chr07_-, gene_16144
Tamaricaceae	Tamarix chinensis	2	TC05G1029, TC09G0526
Zosteraceae	Zostera marina	1	Zosma05g05360.v3.1