halophFGD

Basic Information

Locus ID: Sbi_jg57546

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: gag-polypeptide of LTR copia-type

Maps and Mapping Data

Chromosome/Scaffold	Start	End	Strand	ID
ptg000004l	80064204	80064758	+	Sbi_jg57546

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.06	14,605.16 Da	46.17	63.90	-0.55

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	1	78	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	60	78	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	15	51	-	-

Best hit

Source	Best Hit ID	Description
RefSeq	XP_021768093.1	uncharacterized protein LOC110732453 [Chenopodium quinoa]
Swiss-Prot	Q94HW2	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1
TrEMBL	A0A0D3AH29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	26	Sbi_jg16622, Sbi_jg17073, Sbi_jg19473, Sbi_jg22216 ... Sbi_jg22891, Sbi_jg23686, Sbi_jg23825, Sbi_jg27443, Sbi_jg28868, Sbi_jg3161, Sbi_jg38181, Sbi_jg4031, Sbi_jg40593, Sbi_jg425, Sbi_jg46308, Sbi_jg46391, Sbi_jg46665, Sbi_jg50507, Sbi_jg5171, Sbi_jg52198, Sbi_jg53458, Sbi_jg57546, Sbi_jg57609, Sbi_jg57842, Sbi_jg63673, Sbi_jg7635
Amaranthaceae	Salicornia europaea	3	Seu_jg16625, Seu_jg25299, Seu_jg7424
Amaranthaceae	Suaeda glauca	2	Sgl03630, Sgl40731
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000000054, gene:ENSEOMG00000012600 ... gene:ENSEOMG00000042438
Anacardiaceae	Pistacia vera	2	pistato.v30279440, pistato.v30295370
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.1654.V1.1, AsparagusV1_07.3416.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G30324, Ftri17G32806, Ftri18G17640, Ftri2G04800 ... Ftri5G25740
Brassicaceae	Schrenkiella parvula	3	Sp1g31710.v2.2, Sp3g30840.v2.2, Sp6g11040.v2.2
Brassicaceae	Brassica nigra	6	BniB03g012420.2N, BniB03g019180.2N, BniB03p000127.2N ... BniB05g060060.2N, BniB07g021730.2N, BniB08g051100.2N
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g04970
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate01g10940, gene.Thate01g12370, gene.Thate01g15600 ... gene.Thate02g14470, gene.Thate04g12570, gene.Thate04g23010
Plantaginaceae	Plantago ovata	2	Pov_00011159, Pov_00035385
Plumbaginaceae	Limonium bicolor	7	Lb1G00354, Lb1G04269, Lb1G05332, Lb3G19102, Lb4G26327 ... Lb6G30763, Lb7G34631
Poaceae	Lolium multiflorum	8	gene-QYE76_003245, gene-QYE76_007001, gene-QYE76_013642 ... gene-QYE76_024406, gene-QYE76_035339, gene-QYE76_040688, gene-QYE76_071047, gene-QYE76_071738
Poaceae	Oryza coarctata	7	Oco02G019040, Oco02G023470, Oco12G002390, Oco14G006220 ... Oco16G004580, Oco23G002320, Oco24G006180
Poaceae	Sporobolus alterniflorus	3	Chr03G009110, Chr05G026030, Chr21G013920
Poaceae	Zoysia japonica	5	nbis-gene-20349, nbis-gene-26712, nbis-gene-40161 ... nbis-gene-42276, nbis-gene-52015
Posidoniaceae	Posidonia oceanica	44	gene.Posoc01g13060, gene.Posoc01g13470, gene.Posoc01g17170 ... gene.Posoc01g19610, gene.Posoc01g19890, gene.Posoc01g30520, gene.Posoc02g03670, gene.Posoc02g07870, gene.Posoc02g12200, gene.Posoc02g21640, gene.Posoc02g23720, gene.Posoc02g24020, gene.Posoc02g29000, gene.Posoc03g11580, gene.Posoc03g24400, gene.Posoc03g27140, gene.Posoc04g00740, gene.Posoc04g16630, gene.Posoc04g17200, gene.Posoc04g22090, gene.Posoc04g22120, gene.Posoc04g22140, gene.Posoc04g22170, gene.Posoc04g22200, gene.Posoc04g22210, gene.Posoc04g22240, gene.Posoc04g22320, gene.Posoc04g22340, gene.Posoc04g22350, gene.Posoc05g04040, gene.Posoc05g06180, gene.Posoc05g13900, gene.Posoc05g20610, gene.Posoc06g02030, gene.Posoc06g02880, gene.Posoc06g09130, gene.Posoc06g15880, gene.Posoc06g18800, gene.Posoc06g20520, gene.Posoc06g22270, gene.Posoc07g00420, gene.Posoc08g00970, gene.Posoc08g07810, gene.Posoc09g12000
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-15111
Salicaceae	Populus euphratica	2	populus_peu11926, populus_peu14117
Tamaricaceae	Reaumuria soongarica	2	STRG.21414_chr09_-, gene_5043
Zosteraceae	Zostera marina	11	Zosma01g01490.v3.1, Zosma01g09590.v3.1, Zosma01g11890.v3.1 ... Zosma01g13250.v3.1, Zosma02g01960.v3.1, Zosma03g16350.v3.1, Zosma04g13440.v3.1, Zosma04g14270.v3.1, Zosma05g00490.v3.1, Zosma06g30640.v3.1, Zosma23g00050.v3.1