Basic Information
Locus ID:
Sbi_jg57512
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 78781713 | 78786367 | + | Sbi_jg57512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 124,094.03 Da | 49.73 | 56.11 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 513 | 829 | 3.58845E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 795 | 829 | 5.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 616 | 653 | 1.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 515 | 546 | 4.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 659 | 695 | 0.0068 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 510 | 832 | 9.16E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 499 | 852 | 2.1E-64 | IPR015943 |
| SMART | SM00320 | WD40_4 | 743 | 787 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 788 | 829 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 614 | 653 | 6.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 547 | 6.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 697 | 736 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 656 | 695 | 2.7E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 515 | 556 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 662 | 696 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 621 | 656 | 12.156496 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 621 | 662 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 806 | 829 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 515 | 549 | 11.312864 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 662 | 696 | 10.521959 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 640 | 654 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 534 | 548 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 534 | 548 | 2.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 682 | 696 | 2.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 640 | 654 | 2.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 927 | 977 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1025 | 1040 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 894 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1006 | 1040 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 917 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 869 | 977 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 211 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021854625.1 | uncharacterized protein LOC110793990 [Spinacia oleracea] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology