Basic Information
Locus ID:
Sbi_jg57467
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 76606607 | 76607629 | - | Sbi_jg57467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 37,586.61 Da | 67.64 | 75.38 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 174 | 215 | 4.49198E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 236 | 333 | 1.1E-27 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 7 | 38 | 2.3E-10 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 174 | 215 | 3.1E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 153 | 221 | 1.72E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 221 | 6.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 174 | 214 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 174 | 215 | 11.840146 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021744046.1 | E3 ubiquitin-protein ligase RDUF2-like [Chenopodium quinoa] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N933 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology