Basic Information
Locus ID:
Sbi_jg57319
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 68630573 | 68641730 | - | Sbi_jg57319 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 43,051.84 Da | 52.41 | 70.87 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 312 | 341 | 1.3E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 347 | 373 | 2.5E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 342 | 373 | 1.37E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 309 | 341 | 1.18E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 265 | 301 | 5.9E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 304 | 342 | 3.5E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 343 | 374 | 2.1E-10 | - |
| SMART | SM00547 | zf_4 | 274 | 298 | 8.7E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 314 | 338 | 7.8E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 347 | 371 | 7.7E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 345 | 374 | 9.845309 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 312 | 341 | 9.958232 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 272 | 301 | 9.088732 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 276 | 295 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 349 | 368 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021839796.1 | zinc finger protein VAR3, chloroplastic-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9QPR9 | Zinc finger protein VAR3, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_155050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology