Basic Information
Locus ID:
Sbi_jg5727
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 57009451 | 57012900 | + | Sbi_jg5727 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 11,593.91 Da | 90.98 | 72.47 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 32 | 74 | 6.0E-10 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 22 | 78 | 1.44E-12 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 3 | 80 | 1.1E-21 | - |
| ProSiteProfiles | PS50249 | MPN domain profile. | 1 | 101 | 16.123127 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 101 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_048500396.1 | AMSH-like protease sst2 isoform X9 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | S8DIY7 | MPN domain-containing protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_15365 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg10794, Sbi_jg16797, Sbi_jg20202, Sbi_jg22537 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2426.V1.1 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29011, nbis-gene-51055 |