Basic Information
Locus ID:
Sbi_jg56699
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 29960152 | 29980484 | + | Sbi_jg56699 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 96,519.41 Da | 36.42 | 83.14 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 529 | 571 | 1.5E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 461 | 512 | 4.7E-12 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 265 | 320 | 3.6E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 516 | 573 | 3.09E-15 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 603 | 656 | 3.91E-6 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 728 | 848 | 3.4E-6 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 518 | 599 | 1.2E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 600 | 661 | 4.0E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 602 | 659 | 3.7E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 529 | 570 | 3.6E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 527 | 572 | 10.104099 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 600 | 661 | 8.7513 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 530 | 569 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 603 | 658 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 421 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_010684186.1 | uncharacterized protein LOC104898779 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RIM7 | Increased DNA methylation 1 OS=Spinacia oleracea OX=3562 GN=SOVF_067560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology