Basic Information
Locus ID:
Sbi_jg56622
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 26692153 | 26695979 | + | Sbi_jg56622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 57,595.14 Da | 42.66 | 86.07 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 90 | 130 | 1.4E-4 | IPR001810 |
| Pfam | PF13621 | Cupin-like domain | 210 | 428 | 7.3E-24 | IPR041667 |
| SUPERFAMILY | SSF81383 | F-box domain | 83 | 154 | 1.24E-10 | IPR036047 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 197 | 441 | 3.43E-58 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 174 | 429 | 1.4E-77 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 75 | 157 | 8.2E-8 | - |
| SMART | SM00558 | cupin_9 | 275 | 444 | 8.2E-13 | IPR003347 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 284 | 444 | 40.245224 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06550.1 | 0 | |
| RefSeq | XP_010677600.1 | F-box protein At5g06550 [Beta vulgaris subsp. vulgaris] | 0 |
| Q67XX3 | Arginine-specific demethylase JMJ22 OS=Arabidopsis thaliana OX=3702 GN=JMJ22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QH72 | JmjC domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_179550 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31898 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15283 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002928 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15827, Sbi_jg56622 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13827 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00014437, GOSA_00027055, GOSA_00027172 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52609, Sgl57899 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006593, gene:ENSEOMG00000022129 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0011970, CQ.Regalona.r1.5BG0012210 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30277130 |
| Apiaceae | Apium graveolens | 1 | Ag10G02117 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707320 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1642.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G03641 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06550.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013290m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g36310.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g054230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0985 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1109, Cgl04G1404 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g06260 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0308s00011.v1.0, Dusal.0823s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g10250 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1774 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036291 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11166 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1692, BH04.1685, CH04.1923 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0684970, gene-QOZ80_9BG0711040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0731150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066485 |
| Poaceae | Oryza coarctata | 2 | Oco21G007470, Oco22G008630 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g36450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G172100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103291 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G015970, Chr16G005580, Chr17G004990, Chr31G006960 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G744700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG061620, gene_TRIDC7BG054800 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G443400.1, TraesCS7B02G342200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb200180_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44217 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18094 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1040, evm.TU.LG20.835 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g09160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1086 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4101 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14686 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10188 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.595 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005368 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12503 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5670 |
| Salicaceae | Populus euphratica | 1 | populus_peu26006 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607255 |
| Solanaceae | Solanum chilense | 1 | SOLCI000938700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032279 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12209 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G3018 |
| Zosteraceae | Zostera marina | 1 | Zosma06g18780.v3.1 |