Basic Information
Locus ID:
Sbi_jg56575
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Lymphoid organ expressed yellow head virus receptor protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 24488778 | 24492014 | - | Sbi_jg56575 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 47,770.93 Da | 45.09 | 64.31 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06886 | Targeting protein for Xklp2 (TPX2) domain | 239 | 322 | 5.9E-26 | IPR027329 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 419 | - | - |
| Coils | Coil | Coil | 254 | 284 | - | - |
| Coils | Coil | Coil | 387 | 407 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35880.1 | TPX2 (targeting protein for Xklp2) protein family. | 0 |
| RefSeq | XP_021858992.1 | protein WVD2-like 4 [Spinacia oleracea] | 0 |
| Q9SJ62 | Protein WVD2-like 4 OS=Arabidopsis thaliana OX=3702 GN=WDL4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QG30 | TPX2 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_182970 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology