Basic Information
Locus ID:
Sbi_jg56518
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 22308900 | 22310192 | - | Sbi_jg56518 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 47,216.64 Da | 39.17 | 103.79 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 56 | 5.78767E-23 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 288 | 324 | 2.2E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 9 | 86 | 1.7E-15 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 185 | 408 | 9.0E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 89 | 4.11E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 94 | 1.7E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 101 | 418 | 7.4E-17 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 12 | 84 | 7.3E-24 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 91 | 31.280161 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 296 | 339 | 8.627399 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021771284.1 | E3 ubiquitin-protein ligase PUB23-like [Chenopodium quinoa] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QP36 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_157660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology