Basic Information
Locus ID:
Sbi_jg56296
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 16243677 | 16254622 | - | Sbi_jg56296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 47,907.74 Da | 31.76 | 77.65 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 181 | 4.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 302 | 0.063 | IPR001680 |
| Pfam | PF18345 | Zinc finger domain | 118 | 136 | 2.6E-7 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 341 | 0.026 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 112 | 137 | 3.66E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 136 | 432 | 1.46E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 222 | 437 | 1.6E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 129 | 221 | 2.5E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 392 | 429 | 4.8 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 112 | 138 | 3.8E-5 | IPR000571 |
| SMART | SM00320 | WD40_4 | 265 | 302 | 0.07 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 342 | 9.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 389 | 18.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 26 | 49 | 0.081 | IPR000571 |
| SMART | SM00320 | WD40_4 | 221 | 258 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 181 | 4.7E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 351 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 112 | 139 | 14.351804 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 272 | 305 | 9.678328 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 272 | 311 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 24 | 50 | 10.32388 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 150 | 181 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 190 | 11.544415 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 289 | 303 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 329 | 343 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 289 | 303 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 168 | 182 | 1.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 106 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_010693461.2 | zinc finger CCCH domain-containing protein 48 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QWH9 | Zinc finger CCCH domain-containing protein 48-like OS=Spinacia oleracea OX=3562 GN=SOVF_133470 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology